Experiment with mounting the magnet further below the track. If you've got it directly beneath the ties, try moving it under the roadbed. It sound like the magetic field is too strong. By moving it further away from the track, you'll reduce the field strength.
Set up a test track to do this. You don't want to mess with glue, scenery and ballast until you find the right position for these things.
I've got a number of the above-tie Kadee permanent magnets, and they work pretty well. I found that I had to mount them a bit lower than the position recommended by Kadee, because one of my engines (P2K S1) has very low clearance, and it ran aground on the magnets. They still work fine down a bit lower.
I've also got one of the electromagnets on my main line. It works well, too. Since the track was already installed, I put the whole thing in from below. Believe me, that's not the way to do it. It would have been easier to rip up the track and just follow the directions.