I use stop control blocks on my conventional small layout and have the same problem with faster trains overunning the slower ones. I have minimized the problem in two ways.
1. The faster engines get more cars to pull (or the slower get less). This slows them down a little. Also the faster engine gets the heavier cars (or the slower gets the lighter cars).
2. I reduce the voltage to the faster engines in the following way. Using a pair of opposite facing 3 amp diodes in parallel wired in a series with the motor allows you to reduce the voltage of the faster engine by about 1/2 volt. If the engine still is too fast, then add a second or third pair of diodes. Diodes work great becuse they reduce the voltage by a precise amount that does not vary with load. If you need a diagram, let me know and I'll draw one up and post it.
Bob Nelson
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